PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243495
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 598aa    MW: 65728.9 Da    PI: 7.0607
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243495genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.44.6e-33210312189
            TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssasecea 75 
                    a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++                     +         
  MDP0000243495 210 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELpswnphststtasvpgmethnP--------- 296
                    589**************************************************************5544443333333333222220......... PP

            TCP  76 esssssasnsssg..............k 89 
                                +              +
  MDP0000243495 297 ------------TttgihcfagvdaigS 312
                    ............1223334444444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-29211282IPR005333Transcription factor, TCP
PROSITE profilePS5136933.273213271IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MHQTNERLIM SILFGTYIRL LGEPEAAEAE AASGLRGEVA AQASGDPSSK EKPLAKRGLF  60
VKENHKGLTL DPQRNHDHHY LHQNPILNFT HLVQREEETQ QNHHQAFNFP YFQQDPQTQH  120
QHQHFFGETQ QLQLQEQQQA PKKRSFTSSS STLGEQGIEH ARSKMGDSHH LHHHQATTSS  180
RLGIRPPSSG AGVVSTDIVE VVRGSHIVRA TGRKDRHSKV CTAKGPRDRR VRLAAHTAIQ  240
FYDVQDRLGY DRPSKAVDWL IKKAKAAIDE LDELPSWNPH STSTTASVPG METHNPTTTG  300
IHCFAGVDAI GSANQRTTMV GSGVSEQQIV QNPNSNSTFL PPSLDSDAIA DTIKSFFPTG  360
ASAIAAAAEA PSSTIQFHQN YPPDLLSRTS SQSQDLRLSL QSFQDPILLH QHHAQTHQNE  420
QSLFSGSQNP LGFDGSSAAW AEHHHNQQQQ EMNRFQRMVA WNSGGGDSGD NGGGSSSSGG  480
FTFNSLLPTQ QSGTSSLQQQ QPSLFGQSQF FFQRGPLQSS NSPSIRAWMM DQQNQQSISH  540
DHHHQISQSI HHQPSFSGMG FTSGGGFSGF HIPARIHGEE EHDGISDKPS SASSNSRH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.1480.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310210.0AB531021.1 Malus x domestica MdTCP4A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386233.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-105TCP4_ARATH; Transcription factor TCP4
TrEMBLD5MRQ20.0D5MRQ2_MALDO; MdTCP4A protein
STRINGPOPTR_0001s38480.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-66TCP family protein